PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g005920.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 397aa    MW: 43079.7 Da    PI: 6.6804
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g005920.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1151e-3560195389
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssasec....e 74 
                       g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak++i+el+++                 ++ss+s++    +
  Sopen12g005920.1  60 GRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKASIDELAELppwkptttgaleddidvGTSSKSATimlgQ 152
                       89*************************************************************999999999999999884444433334543 PP

               TCP  75 aesssssasnsssg............................k 89 
                       ++s sss++n +++                             
  Sopen12g005920.1 153 NNSASSSGENVNANtntdgsfmpqsldsdaisdtiksffpmgG 195
                       3333333333222244445555566665555555444444441 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.5E-3160181IPR005333Transcription factor, TCP
PROSITE profilePS5136932.85561119IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MYEDLDTIKQ QQQAQSKKRS FFPPLPRPSS CSKQKAGTSS KFGCGEIVEV QGGHIIRSIG  60
RKDRHSKVCT AKGPRDRRVR LAAHTAIQFY DVQDRLGYDR PSKAVDWLIK KAKASIDELA  120
ELPPWKPTTT GALEDDIDVG TSSKSATIML GQNNSASSSG ENVNANTNTD GSFMPQSLDS  180
DAISDTIKSF FPMGGSGSNE GNSSSMQFQS FQEHNLMSRS QDLKLSLQSF QDPQAQFQAS  240
NFFTGFDASV WPQHEQQPVE LGRLAAARGD IGGGAIAGAG GYLFNSQPAP PLLQQLFSQN  300
QFLSQRGPLQ SSYSPSIRAW IDPSAIAIAT ADPVHQNQNH HQAVFPMYST SVSGIGFASE  360
LGGFSGFRIP TRIQGEIEEE HDGVFDKPSS ASSDSRH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015061568.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR56e-98TCP4_ARATH; Transcription factor TCP4
TrEMBLK4DCU90.0K4DCU9_SOLLC; Uncharacterized protein
STRINGSolyc12g014140.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.31e-89TCP family protein